Computer Assisted Medical Intervention Tool Kit  version 5.2
 
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SimpleElastixRegistrationAction.h
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25#ifndef SIMPLEELASTIXREGISTRATIONACTION_H
26#define SIMPLEELASTIXREGISTRATIONACTION_H
27
28#include <Action.h>
29#include <ImageComponent.h>
30
32
41 Q_OBJECT
42
43public:
46
49
51 virtual QWidget* getWidget() override;
52
54 enum TransformationType { TRANSLATION, AFFINE, B_SPLINE };
55 Q_ENUM(TransformationType)
56
57 enum MetricType { ADVANCED_MEAN_SQUARES, ADVANCED_NORMALIZED_CORRELATION, ADVANCED_MATTES_MUTUAL_INFORMATION, NORMALIZED_MUTUAL_INFORMATION };
58 Q_ENUM(MetricType)
59
60
61 virtual bool event(QEvent* e) override;
62
63public slots:
69 virtual camitk::Action::ApplyStatus apply() override;
70
71private:
73// virtual void process();
74
75private:
76 // last run results
77 int lastExitCode;
78 QString lastStdOutput;
79 QString lastProcessError;
80
81 // used to map item id with component for the "Fixed Image" and "Moving Image" combo box properties
82 QList<camitk::ImageComponent*> imageComponentList;
83
84 // update the elastix version property
85 void updateElastixVersion();
86
87 // ask the elastix executable path to the user, return true if the path is correct
88 void defineElastixExecutable();
89
90 // return the current test name using images names and parameter values
91 QString defaultResultName() const;
92
93 // name of the transformation computed by elastix
94 // As the computed transformation deforms the moving image into the fixed image,
95 // the transformation is a transform from moving to fixed, i.e., {}^{fixed} T_{moving}.
96 // The name should therefore be "moving_to_fixed" where "moving" is the moving image
97 // component name and "fixed" is the fixed image component name
98 QString transformName() const;
99
100 // save the given image component to the given path (preserving the filename)
101 // returns the file name without the path if succeed, empty string otherwise
102 QString saveComponentAs(camitk::ImageComponent* comp, QString path) const;
103
104 // create the elastix parameter file from the current properties, return true if the parameter file was created without error
105 bool createParameterFile(QFileInfo parameterFileInfo, QString initialization, QString transformType, QString similarityMetric) const;
106
107 // run elastix with the given parameter in the given directory, return true if elastix exit with code 0
108 bool runElastix(QStringList arguments, QString workingDirectory = "");
109
110 // Copy the resulting image and logs to the moving image file directory
111 // if everything went well returns the new mhd file to open
112 QString copyResults(QString tempDir) const;
113
114 // copy the given oldName file (name without dir) from source directory
115 // to newName file in the destination directory
116 bool copyFile(QString oldName, QDir source, QString newName, QDir destination) const;
117
118 // replace searchString by replacementString in fileName (given as full absolute path)
119 bool replaceInFile(const QString& fileName, const QString& searchString, const QString& replacementString) const;
120};
121#endif // SIMPLEELASTIXREGISTRATIONACTION_H
#define ELASTIX_REGISTRATION_API
Definition ElastixRegistrationAPI.h:8
Definition PersistenceManager.h:34
Perform a registration.
Definition SimpleElastixRegistrationAction.h:40
TransformationType
Possible Transformation.
Definition SimpleElastixRegistrationAction.h:54
@ AFFINE
Definition SimpleElastixRegistrationAction.h:54
MetricType
Definition SimpleElastixRegistrationAction.h:57
@ ADVANCED_MATTES_MUTUAL_INFORMATION
Definition SimpleElastixRegistrationAction.h:57
This class describes what is a generic Action extension.
Definition ActionExtension.h:57
Action class is an abstract class that enables you to build a action (generally on a component).
Definition Action.h:209
ApplyStatus
describes what happened during the application of an algorithm (i.e. results of the apply method)
Definition Action.h:225
virtual camitk::Action::ApplyStatus apply()=0
This method is called when the action has to be applied on the target list (get the target lists usin...
virtual QWidget * getWidget()
This method has to be redefined in your Action only if:
Definition Action.cpp:168
The manager of the Image Volume data.
Definition ImageComponent.h:77